I am referring to any game that is released on the Super Nintendo/Super Famicom that comes in a box significantly larger than the standard sized ones.
The most obvious examples would be Earthbound, Mario Paint and Super Bomberman Party pack. Here is an example picture of Zelda: A Link to the Past comparing the size of the boxes (Big box version is PAL exclusive, as are most big box games)
I think I have a fairly complete list but I might be missing one or two NSTC/PAL games, and I really don't know much about Super Famicom big box games, except for Mario & Wario.
Europe/PAL
Illusion of Time (Illusion of Gaia)
Secret of Evermore
Secret of Mana
Super Metroid
Yoshi’s Island
Link to the Past
Terranigma
Lufia
Donkey Kong Country 2
North America/NTSC-U
Super Bomberman Party Pack
X BAND
Earthbound
Super Gameboy
Lethal Enforcers
Mario Paint
Japan/NTSC-J
Mario Paint
Mario & Wario
Also there are two different boxes for the Super Game Boy and I don't know any info about this version:



