samsonlonghair wrote:Honestly, Pierrot's answer sounds more scientific than mine.

Eff it man, just open that Sega up and clean the inside as best you can. It's like when someone says, "turn the computer off and back on." It seems like a stupidly simple solution, but it works more often than not.
This would really be the best starting point, anyway. I did a really poor job of outlining any real recourse, so thanks for picking up my slack, samson.
racketboy wrote:So I tried my 6 button controller on that port as well (swapping the two controllers essentially)
I mostly tested this on NBA Jam.
It does seem that "B" functioned as "C" as well. And it also seemed like "C" registered a "C" input right after the "Start" input as it paused the game with the first press and then un-paused and then immediately shot the ball when I pressed it again.
I haven't swapped a bunch of different controllers in there as my son was helping and didn't want to interrupt to much. But I'd be surprised if additional controllers would act differently than these two.
Thanks for your help!
Do the "A" and "C" buttons perform the same action in NBA Jam? I'm curious if you tested the "X," "Y," or "Z" buttons at all, also. If the issue is at all related to what I think it could be, those buttons would potentially give some funky inputs as well. I don't really know how the mux's inputs are configured in the 6-button controller, though.
If you have the chance to open up the console, and take some pictures of the traces and components around the controller ports, that could be helpful in ruling out physical damage.